Citations

GATES

Miaoxin Li, Hong-Sheng Gui, Johnny Sheung Him Kwan and Pak Chung Sham. GATES: a rapid and powerful gene-based association test using extended Simes procedure. The American Journal of Human Genetics (2011). 88(3):283-293. https://doi.org/10.1016/j.ajhg.2011.01.019

ECS

Miaoxin Li, Lin Jiang, Timothy Shin Heng Mak, Johnny Sheung Him Kwan, Chao Xue, Peikai Chen, Henry Chi-Ming Leung, Liqian Cui, Tao Li and Pak Chung Sham. A powerful conditional gene-based association approach implicated functionally important genes for schizophrenia. Bioinformatics (2019). 35(4):628-635. https://doi.org/10.1093/bioinformatics/bty682

DESE

Lin Jiang, Chao Xue, Sheng Dai, Shangzhen Chen, Peikai Chen, Pak Chung Sham, Haijun Wang and Miaoxin Li. DESE: estimating driver tissues by selective expression of genes associated with complex diseases or traits. Genome Biology (2019). 20(1):1-19. https://doi.org/10.1186/s13059-019-1801-5

eDESE

Xiangyi Li, Lin Jiang, Chao Xue, Mulin Jun Li and Miaoxin Li. A conditional gene-based association framework integrating isoform-level eQTL data reveals new susceptibility genes for schizophrenia. Elife (2022). 10:e70779. https://doi.org/10.7554/elife.70779

PCGA on https://pmglab.top/pcga

Chao Xue, Lin Jiang, Miao Zhou, Qihan Long, Ying Chen, Xiangyi Li, Wenjie Peng, Qi Yang and Miaoxin Li. PCGA: a comprehensive web server for phenotype-cell-gene association analysis. Nucleic Acids Research (2022). 50:W568–W576. https://doi.org/10.1093/nar/gkac425

Gene set enrichment

Hongsheng Gui, Johnny S. Kwan, Pak C. Sham, Stacey S. Cherny and Miaoxin Li. Sharing of Genes and Pathways Across Complex Phenotypes: A Multilevel Genome-Wide Analysis. Genetics (2017). 206(3):1601–1609. https://doi.org/10.1534/genetics.116.198150

EMIC

Lin Jiang, Lin Miao, Guorong Yi, Xiangyi Li, Chao Xue, Mulin Jun Li, Hailiang Huang and Miaoxin Li. Powerful and robust inference of causal genes of complex phenotypes with dependent expression quantitative loci by a novel median-based Mendelian randomization. The American Journal of Human Genetics (2022). 109(5):838-856. https://doi.org/10.1016/j.ajhg.2022.04.004

EHE

Lin Miao, Lin Jiang, Bin Tang, Pak Chung Sham and Miaoxin Li. Dissecting the high-resolution genetic architecture of complex phenotypes by accurately estimating gene-based conditional heritability. The American Journal of Human Genetics (2023). 110(9):1534–1548. https://doi.org/10.1016/j.ajhg.2023.08.006